# Chapter 3 outline: energy and matter

Chapter 3 Modules 6-8 Movement of energy and matter

<span style="font-weight: bold;">Module 6: Movement of energy</span>

<span style="font-weight: bold;">Biosphere</span>-all life

<span style="font-weight: bold;">Producer</span> (also primary producer) gets energy from sun or heat directly, also known as autotrophexample: grass

<span style="font-weight: bold;">Photosynthesis</span>: CO2 + water + energy (heat or light) -&gt; sugars (CHO)Reverse process is <span style="font-weight: bold;">respiration</span>: Sugars + O2 -&gt; energy + CO2 + water

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<span id="bkmrk-anaerobic-respiratio" style="font-weight: bold;">Anaerobic respiration</span> (e.g. bacteria) don't use O2, less efficient, older primitive source of energy (pre-oxygen)<div id="bkmrk-consumer%C2%A0%28heterotrop"><span style="font-weight: bold;">Consumer</span> (heterotroph) consumes other primary autotrophs

- Primary consumers eat plants (e.g. herbivores)
- Secondary consumers eat them (carnivores)
- Tertiary consumers eat other carnivores (algae-&gt;zooplankton-&gt;fish-&gt;eagles)

Trophe = "nourishment"Trophic levels = food levels, see also food web

- Scavenger-eats dead stuff
- Detritovore-eats dead stuff that is decaying
- Decomposers-break down into basic elements

<span style="font-weight: bold;">GPP</span> gross primary productivity= Total amount of solar energy into the system: like gross income in a businesse.g. all of the money coming into your business</div><div id="bkmrk-npp%C2%A0net-primary-prod"><span style="font-weight: bold;">NPP</span> net primary productivity = GPP minus respiration (think of Maui onions):gross income-expenses=net income</div><div id="bkmrk-biomass-total-mass-o"><span style="font-weight: bold;">Biomass</span>-total mass of all living things in an ecosystem-odd fact: rain forest soil is the lowest in nutrients and biomass-why?</div><div id="bkmrk-standing-crop-total-"><span style="font-weight: bold;">Standing crop</span>-total plant biomass (e.g. forest)Efficiency is low (around 10%)</div><span id="bkmrk-trophic-pyramid%3A" style="font-weight: bold;">Trophic pyramid:</span> 10x reduction in energy for each level (why?)-vegetarians vs. meat eatersSo, carnivores (us, wolves) are eating harvesting devices (cows) for autotrophs (grasses):  
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Not very efficient, unless you can't digest grass, or it takes too much energy to walk around all day. This IS, however a good argument for global sustainable survival, as the sun will not go away soon, and as long as we have arable (farmable) land to grow plants, we could survive with a global population of 8-10 billion.But we'd need access to fresh water...<span id="bkmrk-recall%3A-energy-%3Ewate" style="font-weight: bold;">Recall: energy-&gt;water-&gt;food-&gt;culture</span>  
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<span id="bkmrk-module-7%3A-movement-o" style="font-weight: bold;">Module 7: Movement of Matter</span>Biogeochemical cycles: bio=life geo = minerals chemical = chemical cycle = something that rotates  
<span id="bkmrk-hydrologic-%28water%29-c" style="font-weight: bold;">Hydrologic (water) cycle:</span>Heat provides energy for <span id="bkmrk-evaporation" style="font-weight: bold;">evaporation</span>,<div id="bkmrk-plants-secrete-water">Plants secrete water as <span style="font-weight: bold;">transpiration</span>,</div><div id="bkmrk-condensation%C2%A0is-coll"><span style="font-weight: bold;">Condensation</span> is collection of water vapor to drops,</div><div id="bkmrk-precipitation%C2%A0is-the"><span style="font-weight: bold;">Precipitation</span> is the falling of these drops as rain, snow, hail etc.</div><div id="bkmrk-eto-evapotranspirati"><span style="font-weight: bold;">ETO evapotranspiration:</span> amount of water moving through an ecosystem, usually plants.Farmers need to know EtO to know how much water to supply to their crops.Eto depends on sunlight, humidity, wind and temperature (think of how these impact transpiration)  
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<span id="bkmrk-runoff" style="font-weight: bold;">Runoff</span>-just like it soundsYou will need to know about "transit time" which is the time it takes rain to reach a water body after hitting the groundWhy is this crucial?(you will see this mentioned in the Poisoned Waters video this weekend)  
<span id="bkmrk-carbon-cycle%3A" style="font-weight: bold;">Carbon cycle:</span> photosynthesis, respiration, exchange, sedimentation, burial, extraction, combustionair&lt;-&gt;water&lt;-&gt;land<div id="bkmrk-photosynthesis-co2-t"><span style="font-weight: bold;">photosynthesis</span>-CO2 to sugar (air to plant structures or fruits-e.g. corn)</div><div id="bkmrk-respiration-sugar-to"><span style="font-weight: bold;">respiration</span>-sugar to CO2</div><div id="bkmrk-acidification-or-exc"><span style="font-weight: bold;">acidification or exchange</span>-HCO3 (carbonic acid) e.g. seawater changing pH, remember?</div><div id="bkmrk-sedimentation-caco3-"><span style="font-weight: bold;">sedimentation</span>-CaCO3 (seashells, limestone) most efficient long term carbon sink (solids are dense)burial-just like it sounds, oil, coal, nat gasextraction-mining fossil fuelscombustion-burning fossil fuels with oxygen to release CO2  
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<span id="bkmrk-nitrogen-cycle%3A" style="font-weight: bold;">Nitrogen cycle:</span>6 macronutrients needed by plants: N,P,K, Ca, Mg, S (sulfur becomes part of Methionine, an amino acid)NPK from fertilizersN is a limiting nutrient<div id="bkmrk-n-fixation-is-when-y">N fixation is when you can't get Nitrogen off your mind  
<span style="font-weight: bold;">Questions:</span>

1. Define N, P, K and how each impacts plants
2. Define evapotranspiration, condensation and precipitation
3. Which biogeochemical cycle only has a solid phase in the environment?
4. What element replaces oxygen in chemosynthesis?

  
It also means bringing N2 gas from the atmosphere into the biome, biotically or abiotically (without life)</div><div id="bkmrk-abiotic%3A-lightning-o"><span style="font-weight: bold;">abiotic</span>: lightning or burning fossil fuels (high temps) direct to nitrate (NO3) (that interesting smell after rainstorms)</div><div id="bkmrk-biotic%3A-nitrogen-fix"><span style="font-weight: bold;">biotic</span>: nitrogen fixing bacteria: N2 -&gt;NO2 -&gt;NO3 -&gt;NH3 -&gt;NH4 ion (used by producers, it is aqueous)</div><div id="bkmrk-commercial-n-fixatio"><span style="font-weight: bold;">commercial N fixation</span>: petrochemicals to form fertilizers (NH3, anhydrous ammonia, ammonium nitrate NH4NO3, which is used in ANFO bombs)</div><div id="bkmrk-nitrification%3A-nh4%2B-"><span style="font-weight: bold;">nitrification</span>: NH4+ -&gt;NO2- -&gt;NO3-nitrite kills bacteria (used in preserving meats), but nitrate is a good plant fertilizer (ANFO bombs, [Beirut harbor explosion](https://www.youtube.com/watch?v=LNDhIGR-83w))</div><div id="bkmrk-assimilation%3A-produc"><span style="font-weight: bold;">assimilation</span>: producing amino acids and then proteins (chains of AA)</div><div id="bkmrk-dead-stuff%3A%C2%A0minerali"><span style="font-weight: bold;">Dead stuff:</span> mineralization or ammonification (dead fish smell: NH4+ and amines)</div><div id="bkmrk-vitamins%C2%A0%3D-%22vital-am"><span style="font-weight: bold;">Vitamins</span> = "vital amines"  
<span style="font-weight: bold;">denitrification</span>: NO3- goes to N2O to N2 gas (anaerobic bacteria, swamps)</div><div id="bkmrk-leaching%3A-washing-n-"><span style="font-weight: bold;">Leaching</span>: washing N out of soil  
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<span id="bkmrk-phosphorus-cycle%3A" style="font-weight: bold;">Phosphorus cycle:</span>Mainly rocks, between land and waterONLY SOLIDS, NO LIQUID OR GAS PHASE<div id="bkmrk-biotic%3A-animals-upta"><span style="font-weight: bold;">biotic</span>: animals uptake PO4--- (see also phosphoric acid H3PO4), turn it into bones, teeth as CaPO4, then back to soil</div><div id="bkmrk-abiotic%3A-phosphate-s"><span style="font-weight: bold;">abiotic</span>: phosphate sediments in ocean-&gt; become rocks, erosion on land dissolves into watershed</div><div id="bkmrk-humans%3A-phosphate-de"><span style="font-weight: bold;">Humans</span>: phosphate detergents, fertilizers (Dead zones)</div><div id="bkmrk-algal-bloom%3A%C2%A0po4--%3E-"><span style="font-weight: bold;">Algal bloom:</span> PO4 -&gt; lots of algae on surface (light) -&gt; these die, fall to the bottom, and as they decompose, they take all O2 from the water (hypoxia)Arsenic in bananas---why we cannot use greywater for irrigation  
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<span id="bkmrk-ca%2C-mg-and-k%3A" style="font-weight: bold;">Ca, Mg and K:</span> dust (Kauai dependent on Gobi desert dust for K)<div id="bkmrk-sulfur-cycle%3Arocks--"><span style="font-weight: bold;">Sulfur cycle:</span>rocks -&gt; SO4, can become part of methionineSee also SO2 (vog, acid rain, pollution)  
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Here's something interesting:Find Sulfur below:</div><div class="sandbox" id="bkmrk-unavailable-apple-wi-24"><div id="bkmrk-unavailable-apple-wi-25"><div id="bkmrk-unavailable-apple-wi-26"><div><div class="container"><div class="frontside"><div class="iframe">**Unavailable Apple Wiki media:** the exported data did not include file bfa775c1-5d37-4151-b3b2-510bd442faed.

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Ok, now find Oxygen.Hydrothermal vents use sulfur instead of oxygen for a thermal (heat) version of photosynthesis called <span id="bkmrk-chemosynthesis" style="font-weight: bold;">chemosynthesis</span>  
  
<span id="bkmrk-module-8%3A-response-t" style="font-weight: bold;">Module 8: Response to disturbances</span><div id="bkmrk-recall-negative-feed">Recall negative feedback (stable ships, relationships): greater the disturbance, the greater the restoring force (pendulums too)</div><div id="bkmrk-resistance%C2%A0is-how-ha"><span style="font-weight: bold;">Resistance</span> is how hard it is to move the pendulum (ecosystem) away from center  
<span style="font-weight: bold;">Resilience</span> is how fast the pendulum (ecosystem) returns to normal</div><div id="bkmrk-biodiversity-and-dis"><span style="font-weight: bold;">Biodiversity and disturbances:</span>This is strange stuff:Rare disturbances = competition, so only a few species dominateCommon disturbances = only fast reproducers survive, so low biodiversityIntermediate disturbances = highest biodiversity  
<span style="font-weight: bold;">Watershed</span>: drainage basin usually leading to a large body of water (Chesapeake watershed is huge):[https://www.cbf.org/about-the-bay/chesapeake-bay-watershed-geography-and-facts.html](https://www.cbf.org/about-the-bay/chesapeake-bay-watershed-geography-and-facts.html)  
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</div></div></div></div></div></div></div><div class="entry" id="bkmrk-questions%3Ahow-do-you"><div class="entry_content"><div class="summary"><span style="font-weight: bold;">Questions:</span>

1. How do you think this impacts the water quality, phosphates, nitrates and silt in the Chesapeake bay?
2. Why are we not allowed above the fences behind Pu'u La'e La'e?
3. On Oahu, the watershed is guarded by a barbed wire fence-why?
4. How are the Himalayas acting as a watershed?
5. why is the soil on Kauai so poor, and how does it get its Potassium?
6. how does the size of the Cheseapeake watershed impact eutrophication in the Chesapeake bay?
7. what is the difference between resistance and resilience in natural systems?
8. why do rotting fish smell so bad?

  
<span style="font-weight: bold;">Summary notes:</span>Systems 

- systems are usually connected, exchange matter and/or energy
- main energy source is our sun, or past suns (e.g. uranium)
- feedback loops (again)
- spheres: litho=stone, bio=living, hydro=water, atmo=above
- geosphere: crust-mantle-core-inner core (spins, no way!)
- plates-who thought this up? need to understand convection
- where are oldest parts of crust? trick question
- subduction zones, mid atlantic ridges (atlantis?)
- eq: deep near subduction zones, shallow in transform faults
- mid atlantic ridge: how do we know this? submarines
- himalayas-how? matterhorn-what?
- water cycle: evaporation and transpiration (eTO)
- precipitation-condensation is first (condensation nuclei, e.g. vog)
- aquifers-underground lakes, low turnover rate (pesticides) Oglalla
- water can be ground water: aquifer, water table, water lens or surface water

<div>Cycles</div><div>

- conservation of matter (neglect E=mc2)
- nutrient cycles: carbon, oxygen, phosphorus, nitrogen COPN
- primary producers-photosynthesis: CO2, water and light/heat
- create sugar as stored food, structural element
- consumers-eat primary producers, decomposers break down waste/detritus
- cellular respiration (flowers in hospitals) at night
- carbon also in HCO3- ion (seawater) and CaCO3 (seashells, limestone)
- greenhouse effect from CO2 captured as plants-&gt;oil/coal "carbon bank"
- phosphorus: rocks and water (stone and sea), erosion, very limited supply in biosphere (Waterloo bones)
- P only absorbed in aqueous form (aq)
- too much = eutrophication (also nitrogen) see dead zones
- eutrophication: too much of a good thing, when algae dies, decomposes, creates hypoxic zones
- aerobic vs. anaerobic bacteria-wounds
- nitrogen cycle-NPK
- N2 to life: lightning and bacteria (N2 to ammonia NH3 then to NO2 and NO3 (plants absorb NO3)
- denitrifying bacteria change NO2 back to N2 (gas)
- Haber process
- See figure 3.30-nitrogen uptake
- golf courses-Mauna Kea, iBoat

<div>---for later-<span style="font-weight: bold;">Poisoned waters:</span><span style="font-weight: bold;">Video</span>:[http://physics.hpa.edu/physics/apenvsci/videos/poisoned\_waters/POISONED\_WATERS.mp4](http://physics.hpa.edu/physics/apenvsci/videos/poisoned_waters/POISONED_WATERS.mp4)  
[http://physics.hpa.edu/physics/apenvsci/videos/poisoned\_waters/poisoned\_waters.m4v](http://physics.hpa.edu/physics/apenvsci/videos/poisoned_waters/poisoned_waters.m4v)  
<span style="font-weight: bold;">Weblog page:</span>[http://physics.hpa.edu/groups/apenvironmentalscience/weblog/973c4/Poisoned\_Waters\_videoPBS.html](http://physics.hpa.edu/groups/apenvironmentalscience/weblog/973c4/Poisoned_Waters_videoPBS.html)  
  
On campus try these:[http://physics.local/physics/apenvsci/videos/poisoned\_waters/POISONED\_WATERS.mp4](http://physics.hpa.edu/physics/apenvsci/videos/poisoned_waters/POISONED_WATERS.mp4)  
[http://physics.local/physics/apenvsci/videos/poisoned\_waters/poisoned\_waters.m4v](http://physics.hpa.edu/physics/apenvsci/videos/poisoned_waters/poisoned_waters.m4v)[http://physics.local/groups/apenvironmentalscience/weblog/973c4/Poisoned\_Waters\_videoPBS.html](http://physics.local/groups/apenvironmentalscience/weblog/973c4/Poisoned_Waters_videoPBS.html)</div></div></div></div></div>  
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